rs36239765 SNP Detail

Summary

• ID
  rs36239765
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:41523731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAATACTAA TTCCACCTCT CTTTACTTTC CAGAGGATCT
  GAGAAATGTG ACTCCACCCA AGGTCTCCTT GTTTGAGCCA TCAAAAGCAG AGATTGCAAA
  M
  AAACAAAAGG CTACCCTCGT GTGCTTGGCC AGGGGCTTCT TCCCTGACCA CGTGGAGCTG
  AGCTGGTGGG TGAATGGCAA GGAGGTCCAC AGTGGGGTCA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51624279	NES14839696	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36239765					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51624279	NES14839696	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:41523731 () rs orientation: forward

Symbol	Name	Function Class
Gm68268	predicted gene, 68268	86 bp downstream
Tcrb	T cell receptor beta chain	within coordinates
Trbc2	T cell receptor beta, constant 2	Coding-NonSynonymous
Tssr1821	transcription start site region 1821	1907 bp downstream
Tssr1822	transcription start site region 1822	723 bp upstream
Tssr55946	transcription start site region 55946	1964 bp downstream
Tssr55947	transcription start site region 55947	1780 bp downstream
Tssr55948	transcription start site region 55948	702 bp downstream
Tssr55949	transcription start site region 55949	491 bp downstream
Tssr55950	transcription start site region 55950	220 bp downstream
Tssr55951	transcription start site region 55951	500 bp upstream
Tssr55952	transcription start site region 55952	547 bp upstream
Tssr55953	transcription start site region 55953	583 bp upstream
Tssr55954	transcription start site region 55954	631 bp upstream
Tssr55955	transcription start site region 55955	656 bp upstream
Tssr55956	transcription start site region 55956	697 bp upstream
Tssr55957	transcription start site region 55957	985 bp upstream
Tssr60579	transcription start site region 60579	1940 bp upstream