rs33900340 SNP Detail

Summary

• ID
  rs33900340
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119525418 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGTAC TCTCACATGC ATGTTTGCAC
  K
  TTCCCAAACA GGTTCCCACA AGGGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ
ss46464379	mCV22805012	ABI	CRAMUS_MOUSE	f	SNP		T	G
ss63333093	NES17507476	PERLEGEN	MM_PANEL2	r	SNP	A		C	C	C	C
ss147333301	ENSMUSSNP7055886	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	FVB/NJ
rs33900340					SNP	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63333093	NES17507476	PERLEGEN	MM_PANEL	r	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119525418 () rs orientation: reverse

Symbol	Name	Function Class
Rr367685	regulatory region 367685	1312 bp upstream
Rr598629	regulatory region 598629	1667 bp distal
Rr598630	regulatory region 598630	330 bp distal
Rr598631	regulatory region 598631	624 bp distal
Rr598632	regulatory region 598632	665 bp proximal