rs33892163 SNP Detail

Summary

• ID
  rs33892163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:89230433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTTCAGAG TGCTTATGAA GGAGGTCTTA AAGGAAGCCA
  GGTGCCTTAT TGATAAAAAC CAAGGACTTC AGAGCGCATC TTCTGGTAGT ACGTGTGTCA
  R
  ATTCCCCATC TAGGACCATG NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
  NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNN                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45702005	mCV23376657	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss321204821	CHEV_4_88958105	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33892163					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89230433 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	1157 bp upstream
Cpgi14441	CpG island 14441	931 bp distal
Gm12610	predicted gene 12610	within coordinates
Rr398336	regulatory region 398336	943 bp downstream
Rr595183	regulatory region 595183	1549 bp distal
Rr595184	regulatory region 595184	1023 bp distal
Rr595185	regulatory region 595185	759 bp distal
Rr595186	regulatory region 595186	931 bp distal
Rr595187	regulatory region 595187	1275 bp proximal
Tssr42412	transcription start site region 42412	1181 bp upstream
Tssr42413	transcription start site region 42413	1171 bp upstream