rs33892134 SNP Detail

Summary

• ID
  rs33892134
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137114353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCACACTAGT ATCCTACCTT CCCTCCAGTT CCCTTCCCGC AGCTACTCAT TATCCTTAGA
  ACCCTGCTAT TCTTGATATG CTCATATTCT GTGTCTGTGT CTCTCTCTCT TTCCTCTACG
  CCCTGCCCTA GCCACAGTTT ATAGGCTGTG CTCAGTCTAC TTCTTTCTCT CTGCTCTGGA
  CTCTTCCACA GGCCTCTGGC TGTTCTCTCT CTATTATCTA TAATAAAAAC CTTCCCCTTA
  ACCATATCAT GGATGGATCA TGTTGTCAGT AAATTATGTA CACAGCTGGG CAGTGGTGGC
  R
  CACACCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAGGTG GATTTCTGAG TTCGAGGCCA
  GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAC ACAGAGAAAC CCTGACTTGA
  AAAAAAAAAA AAAAAAACCA ACAACAACAA CAAAAAAGAA ATTATGCACA CTATAGAAGA
  AATTATACAC ACACTGAAGA AAAATACACA CTAGCACAAG TATAACACAT CCACAAACCA
  TACCTGGAAG TTTATTAAAT TAACTGTGCT TCTGAACACA CGACCGAGGA AGGAAATAAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45696679	mCV25232245	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33892134					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137114353 () rs orientation: forward

Symbol	Name	Function Class
2810405F17Rik	RIKEN cDNA 2810405F17 gene	217 bp downstream
Cpgi15128	CpG island 15128	768 bp proximal
Gm52681	predicted gene, 52681	1226 bp upstream
Gm69272	predicted gene, 69272	165 bp downstream
Rr377264	regulatory region 377264	633 bp upstream
Rr602608	regulatory region 602608	963 bp proximal
Rr602609	regulatory region 602609	1464 bp proximal
Rr602610	regulatory region 602610	1676 bp proximal
Tssr1346	transcription start site region 1346	1652 bp upstream
Tssr44122	transcription start site region 44122	1093 bp downstream
Tssr44123	transcription start site region 44123	1329 bp downstream