rs33891788 SNP Detail

Summary

• ID
  rs33891788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89228896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG CCGGTAAGGC CTGGGGACCC
  Y
  CGCTACCTGG ATTGGGCGCC TCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45636631	mCV23376956	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss321204811	CHEV_4_88956568	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33891788					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89228896 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdkn2b	cyclin dependent kinase inhibitor 2B			Intron
				Splice-Site
Cpgi14441	CpG island 14441			within coordinates
Gm12610	predicted gene 12610			within coordinates
Rr376809	regulatory region 376809			1562 bp downstream
Rr398336	regulatory region 398336			294 bp upstream
Rr595183	regulatory region 595183			12 bp distal
Rr595184	regulatory region 595184			370 bp proximal
Rr595185	regulatory region 595185			515 bp proximal
Rr595186	regulatory region 595186			585 bp proximal
Tssr42412	transcription start site region 42412			300 bp downstream
Tssr42413	transcription start site region 42413			362 bp downstream