rs33891735 SNP Detail

Summary

• ID
  rs33891735
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:89227962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGGAACAC AATAACCTTT TTCTTTCTTT TGGCGAGGTA
  AGGGCTGTTT TTACAGCGGC AAAAAGATTT AAAAGTTTTT AGTAAAAGCC ATAAATAAAA
  W
  TTTTTATACG GTCTTTATAC TCACTTTACA ATTTTTTTTT AACTTTTAAA AAATTCTTTT
  GTTAAACACC CCTTTTTCAT AAAAACTGAA GAGAAATGG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45627353	mCV23376998	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss146947755	ENSMUSSNP4973473	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss321204802	CHEV_4_88955634	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33891735					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:89227962 () rs orientation: forward

Symbol	Name	Function Class
Cdkn2b	cyclin dependent kinase inhibitor 2B	Intron
Gm12610	predicted gene 12610	within coordinates
Rr376809	regulatory region 376809	628 bp downstream
Rr398336	regulatory region 398336	1228 bp upstream
Rr595183	regulatory region 595183	901 bp proximal
Rr595184	regulatory region 595184	1304 bp proximal
Rr595185	regulatory region 595185	1449 bp proximal
Rr595186	regulatory region 595186	1519 bp proximal
Tssr42412	transcription start site region 42412	1234 bp downstream
Tssr42413	transcription start site region 42413	1296 bp downstream