rs33890659 SNP Detail

Summary

• ID
  rs33890659
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116021624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGTACCTGA ATTCAATTCC CAGCATTCAA GCCAGGTGGC TCACAACAGC CTGTACCTCC
  AGCTCCAGAG ATTCTGCAAC CTCTGGTCCC CATGGATAGT CGAATTTATG TGTGTATGCA
  AACACACACA CACACACACA TGTATGCATT CACATACACA TAATTAAAAG TAAAATAAGT
  CTTAAAAACA TAACCCTAAG TATTTCTTTT TGTATTCAAG GATATGAGTG TTGTTAGATG
  ATACAAGATC TGGTATAGTA AGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  W
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAAT TTGTGTGTGT GTGTATGTGT
  GTGCGTGTGA CCACTCATGC GTATCTGTGT GTACATGCAT ACATGTGCAT GTCTGTGTGT
  GTGTGTACAT GTGTGTGTAC ATGTGTGTGT GTCTGTGTGT GTGTCTAACA ACTTCCAGAA
  CAGTGCTTTT TCTCCACACA AAGAATCCTA CTAAACTCTG TGTCCCTCAA CACCACAAGC
  TAATGTCTAT TTGTATATGC AAGTAAAATG CACATATCTT CTCTGCCTAA AGTAGAGTCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45406517	mCV24556550	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss135669521	ENSMUSSNP3883103	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33890659					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116021624 () rs orientation: forward

Symbol	Name	Function Class
Rr583675	regulatory region 583675	411 bp proximal
Rr583676	regulatory region 583676	920 bp proximal