rs33890586 SNP Detail

Summary

• ID
  rs33890586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30911657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAGAGAGAGA ACAAACAAAC
  R
  GGGTTAGGTT GCCTCCAGTC AGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45391887	mCV25261621	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss320694183	CHEV_3_30756430	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33890586					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30911657 () rs orientation: forward

Symbol	Name	Function Class
Gm42199	predicted gene, 42199	1139 bp upstream
Gpr160	G protein-coupled receptor 160	Intron
Rr574831	regulatory region 574831	1598 bp distal
Rr574832	regulatory region 574832	1483 bp distal
Rr574833	regulatory region 574833	1151 bp distal
Rr574834	regulatory region 574834	851 bp distal
Tssr28695	transcription start site region 28695	1750 bp downstream
Tssr28696	transcription start site region 28696	1506 bp downstream
Tssr28697	transcription start site region 28697	1501 bp downstream
Tssr28698	transcription start site region 28698	1482 bp downstream