rs33890538 SNP Detail

Summary

• ID
  rs33890538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113783547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAAGTACTAC AATGGACTGA TAGATACTAG ACTTCACACT GAGTAACCAA CAAAAATGTA
  AGCATACTTG CCATGCTAGG AAGTTCTAGA CATTACCTGG AGATGAAGAC CTTTCCTCCG
  TTATGCACTT TGAACATGAC ATTTCTTCCT TGCCATTGTC TTCAAGTCAA TGAAATCAGA
  TAACCATATA GAAAGAAGCC TCTGAAACCC TGAGCCAAAA TATAGCATTC TTACTTAAAT
  TGGTGCTCTT GGGTATTTGA GACAGTCATG AAGAGTCTGA CCAACATATA TATATTCAAT
  R
  ACTCAGCACT TTCTCTATTT CTGTCTTCTC TGATAACTTA TGACAAAGAT ACTAGGAGTA
  AATGTCCTTA ATTCAAAATT TCTAGGTCTG AAATTCGTAA TTATTACTGG AAGCTTACTA
  AGTCAGGACT CTCACCATGA TCTATCTTAC TGTATGAAAC AATTGTGATG TGTGTTCAAG
  ATTAAAGGAT ATGATGATAA TTAGCAGCGC CAACCATCAA ATAGCCATTT CCTTTTCTTT
  GAGTTTTTCA GGCAAGCTGC TTAAGAGTCT ATTGGACTCC TAGCTTTGAC TCATGAATAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45381055	mCV23813384	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33890538					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113783547 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562808	regulatory region 562808	350 bp distal