rs33890491 SNP Detail

Summary

• ID
  rs33890491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113782190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTCCTTAAG ACAATGCAGG GGAAAGCACT CTGTCAGTTT CTCCCTCCAC TCCCAGGCTC
  TTCATCGAAT ATAACCTTAT CCCCCTCCCC ACCCAAGCAC TATCTACGCC ACTCTTTTCT
  CTCAGTAAAC TATTGCTCAT TGTCTTACAA TTGTGCTCAG GAGTAACACC AATCCTGCAT
  GTGAGATGTC TCCAAGGGAA TATTTGTCTC CAAGAGCAAA CCAAGCATTT AAACTCTGAA
  GGAATGGCAA AAGTGGGCAT AATGTTTTGT GTCAGAGAAC TTCCTTACAG CACTGTAAAA
  Y
  TACACAAGAG AAGACTTCTG CCTATAGTGT CAACCAGCCC ACTAAAGGAT TTGTCTTCAT
  CTATTTTCTA AAGCATAACG TTATAAACTG GGTAATTTAA AATAGAAAAG AATTTCTGAA
  GGCTGTGAAG TTCAAAATTA GAAGCTGAAT TTGAGGGTTT GTTTATTTGT CTATCTATCT
  ATCATCTATG TATCTATCTA TGTATCTATG AATCTATCAT CTATGTATCT ATGTATCTAT
  GTATCTATGT ATCTATCTAT CATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45370361	mCV23813371	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33890491					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113782190 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562807	regulatory region 562807	1850 bp distal
Rr562808	regulatory region 562808	986 bp proximal