rs33890452 SNP Detail

Summary

• ID
  rs33890452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113783948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTATTACTGG AAGCTTACTA AGTCAGGACT CTCACCATGA TCTATCTTAC TGTATGAAAC
  AATTGTGATG TGTGTTCAAG ATTAAAGGAT ATGATGATAA TTAGCAGCGC CAACCATCAA
  ATAGCCATTT CCTTTTCTTT GAGTTTTTCA GGCAAGCTGC TTAAGAGTCT ATTGGACTCC
  TAGCTTTGAC TCATGAATAT GTCTTCAACC AGCATGATCA AAAAGACAAC TCTTTGAAAT
  ACTCAAAGAG GCATAGTTCG TTGATGCATT TATAAATATT TATAAAAAAT TTTGTGTGAG
  Y
  GAGGCTTTTA TTGAAAATCT TTAAAGTGTT CTGATTTTGA AAATGTTATT TCCAAAACAA
  CGTTGAAATT GCTTTAGAAG ATTCATTGGA CTTTTTAGGG TAGAAACATG AAAGGGCTAC
  ATCCAATATC ACGTGAAAAA TACTGGTAAG AATATTAGCA GCGTATATTG GTGTGGTGAG
  TAAATGTGTC AGAGAGGAAA GGGAGAACTC TCAAAAATCA TGACAAATGT GGATCGATGA
  GCAAACTGGG CCAACTTGTC AAATGCTTCA AAACCAGCCA GAGGAGGTTC CAGGTTGGTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45362105	mCV23813395	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33890452					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113783948 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562808	regulatory region 562808	751 bp distal