rs33890451 SNP Detail

Summary

• ID
  rs33890451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:80088267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAACCTAGAA TGGCAAGTCA AGAAAACTCC TTTCCTCCCT ACATTACTTT TAGTCAGATT
  ATTTTATCAC AGAAATAGAA ATAAAATTAT AATGACTGAT TATTTTGAAA TGACAAGAAG
  ACAAATACAT GAAATGATAG AAAAAAATCT AGAAATAAGA GATGAGTTTG AAGTGATCGA
  GCTGACTGAA ATTAGAGGAT TAAAAGGTTT TCTAGGGGAC TGGAGAGATG GCTCAGTGAC
  TAGGAGCACT GTCTGCTCTT TCAGAGGTCC TGAGTTCAAT TCCCAGCAAC CACATGGTAG
  Y
  TCACAACCAT CTTAATGAGA TCTCATCCCC TCTTCTGGTG TGTCTGAAGA TAGCAATAGT
  GTACTCACAT ACATACAATA TATAAATTTT TTTAAAAATG TTTTTCTAGG AAATGCACAC
  TATTACAAAT GTGTAAGTTC ACAAACTTAG AATGTGGTTC CCTGTGCTTA AAAGCAAGGC
  TCTCTTCAAA GATTTGTCTG CTTATATTGG GAAATTTTGA CTCTGTTGAA GATCCTGTGT
  CTTCTCCACT TTATTTGGCT TTTTGTGGTA GTATGTGAAG TCTTATCACT TTAGTTAAGT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45361866	mCV25098558	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33890451					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:80088267 () rs orientation: forward

Symbol	Name	Function Class
Tssr24926	transcription start site region 24926	126 bp upstream