rs33890450 SNP Detail

Summary

• ID
  rs33890450
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113781786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCCTTCTCT TTGTCTGGTT GCTCTCGCTG GCAAGTCCAT CCCTTCACTG TCATTAGAAT
  CCACTTCTCA GGATTCCAGA CTACACTGAA GACCAGCTGA GACATCCAGC CTAGTGGACT
  GACCAACTAC TGAATTCTCC AATATTCTGT TGTTAGAGAG CCATTGTTGG ACCAGCATGT
  AAGCTGTTCT AATAAATCCC CACTTCTCTC CATGCTTTTC CTATAGAGAA CCTTGAGCAA
  TACAGCACCA AAGAAGGAGA AGGATATTGC ATTAAATGAA AGAACAACCA GGACACCTTA
  Y
  AAGGCTAAAC AATCACAGGG TATGTACAAA TTATTGATTA AACCTGGGTC AGTTCCTGTA
  AGTGTAAGGT AATGAAAATG TACAGAAGAC AAACTCACTG AACTTTCCTT AAGACAATGC
  AGGGGAAAGC ACTCTGTCAG TTTCTCCCTC CACTCCCAGG CTCTTCATCG AATATAACCT
  TATCCCCCTC CCCACCCAAG CACTATCTAC GCCACTCTTT TCTCTCAGTA AACTATTGCT
  CATTGTCTTA CAATTGTGCT CAGGAGTAAC ACCAATCCTG CATGTGAGAT GTCTCCAAGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45361651	mCV23813361	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33890450					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113781786 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562807	regulatory region 562807	1446 bp distal
Rr562808	regulatory region 562808	1390 bp proximal