rs33890287 SNP Detail

Summary

• ID
  rs33890287
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113783356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTGTTCAATG ACCTCAATAA TTTAGAATTC ATGAATAAAT AACTTGCCCA GGAGGCTACA
  TTGGGGCTTC TATTTTTACC TAGAGTCTCT CACCAAGCAA AGTGACCTCT CAAGGATCCA
  ATAGTGACAC CCACTGGTCT TCTGGCTTCC TGGAGAATGG CCTGGTAGAG TATCTATACA
  GAGTCTTTTC TCAAGTACTA CAATGGACTG ATAGATACTA GACTTCACAC TGAGTAACCA
  ACAAAAATGT AAGCATACTT GCCATGCTAG GAAGTTCTAG ACATTACCTG GAGATGAAGA
  S
  CTTTCCTCCG TTATGCACTT TGAACATGAC ATTTCTTCCT TGCCATTGTC TTCAAGTCAA
  TGAAATCAGA TAACCATATA GAAAGAAGCC TCTGAAACCC TGAGCCAAAA TATAGCATTC
  TTACTTAAAT TGGTGCTCTT GGGTATTTGA GACAGTCATG AAGAGTCTGA CCAACATATA
  TATATTCAAT GACTCAGCAC TTTCTCTATT TCTGTCTTCT CTGATAACTT ATGACAAAGA
  TACTAGGAGT AAATGTCCTT AATTCAAAAT TTCTAGGTCT GAAATTCGTA ATTATTACTG
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45319350	mCV23813383	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33890287					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113783356 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562808	regulatory region 562808	159 bp distal