rs33890219 SNP Detail

Summary

• ID
  rs33890219
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113782401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAGAGCAAAC CAAGCATTTA AACTCTGAAG GAATGGCAAA AGTGGGCATA ATGTTTTGTG
  TCAGAGAACT TCCTTACAGC ACTGTAAAAC TACACAAGAG AAGACTTCTG CCTATAGTGT
  CAACCAGCCC ACTAAAGGAT TTGTCTTCAT CTATTTTCTA AAGCATAACG TTATAAACTG
  GGTAATTTAA AATAGAAAAG AATTTCTGAA GGCTGTGAAG TTCAAAATTA GAAGCTGAAT
  TTGAGGGTTT GTTTATTTGT CTATCTATCT ATCATCTATG TATCTATCTA TGTATCTATG
  W
  ATCTATCATC TATGTATCTA TGTATCTATG TATCTATGTA TCTATCTATC ATCTATCTAT
  CTATCTATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCCACTT TTGCCTTTTG
  GTACAGTCTA GCCCATGTTG GCCTTGAACT TGAGCTCTTC CTGTCTTGCC TTCCTAAATG
  CTGGGATTAC AGATGTGCTT CTCTGTATCT AGCTGAGGTC CTTCTTGTTT TATTATAGCC
  TGTCAGAAGA CATCACAAAA GAGAGGGAGG GGAGAAAGGA AAGGACAGAG GAAGAGAGAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45306638	mCV23813372	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33890219					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113782401 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562808	regulatory region 562808	775 bp proximal