rs33890199 SNP Detail

Summary

• ID
  rs33890199
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113748263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATCACCTATC CTATCACATG GATTAAGGCT GGTCTTCAAT AACAGTAAAA ACAACAGAAA
  GCCCACATAC ACAAGGAAGC TGAACAACTC TCTATTCAAT GATAACTTGG TCAGGGAAGA
  AATAAAGAAA TTAAAGACTT CTTGGAATTC AATGAAAATG ATGACACAGC ATACCCAAAC
  TTATAGGACA CAATGAAAGC AGCTCTCAGC GGAAAATTCA AAGCACTAAG TGTCCTGGTA
  AAAAAATGTG TAAGCAGACA TGATGTAGAG AAGAAGCTGA GAGATCTACA TCATGATCCA
  K
  AGTAAACAGA GAGAACTGAC TTGAGCTTCT GAGACTTCAA AGCCAGCCCC AACAGTGATA
  CACTTCCTCC AACAAGACAC TCCACAACCA CTCCAACAAG GCCACATTTC CTAATAATGT
  CACTTCCTAT GGACCAAGCA TTTAAACACA TGAAGTCTAT GGGAGCCATT CCTAATCAAA
  CCATCACAAA GGAATAAATG CCCCTTTGTA TCAGAAAAAA AATAATTGCT ATTATTCTCA
  CTTTACATAT GATATCTGTG GACTAAGCCT CAACAGTCAC CCCCAGACCA AGGAGTATGT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45303790	mCV23812022	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33890199					SNP	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113748263 () rs orientation: forward

Symbol	Name	Function Class
Gm75060	predicted gene, 75060	within coordinates
Rr562806	regulatory region 562806	1685 bp proximal