rs33890144 SNP Detail

Summary

• ID
  rs33890144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113783227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTCACCACT AAGTACATAC TCACTTGTCA TTTTTTTACA CCATGTTCCT TCTATCCCAT
  GAAGATGTAG CCTTCCTGAA AAAACAGTTC ACCATGTTCC CTCTTTTCTC ATGGGTTAAA
  AATAGCACAC TGTTCAATGA CCTCAATAAT TTAGAATTCA TGAATAAATA ACTTGCCCAG
  GAGGCTACAT TGGGGCTTCT ATTTTTACCT AGAGTCTCTC ACCAAGCAAA GTGACCTCTC
  AAGGATCCAA TAGTGACACC CACTGGTCTT CTGGCTTCCT GGAGAATGGC CTGGTAGAGT
  R
  TCTATACAGA GTCTTTTCTC AAGTACTACA ATGGACTGAT AGATACTAGA CTTCACACTG
  AGTAACCAAC AAAAATGTAA GCATACTTGC CATGCTAGGA AGTTCTAGAC ATTACCTGGA
  GATGAAGACC TTTCCTCCGT TATGCACTTT GAACATGACA TTTCTTCCTT GCCATTGTCT
  TCAAGTCAAT GAAATCAGAT AACCATATAG AAAGAAGCCT CTGAAACCCT GAGCCAAAAT
  ATAGCATTCT TACTTAAATT GGTGCTCTTG GGTATTTGAG ACAGTCATGA AGAGTCTGAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45288691	mCV23813373	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33890144					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113783227 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562808	regulatory region 562808	30 bp distal