rs33890062 SNP Detail

Summary

• ID
  rs33890062
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113781664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTTCTTTATT AAATCATTTG AAGTGGGAAG ACCACTTTCA ATTCAGATCT TTTGAGGTGG
  GAAAATTTCC CTATAACCTG GACCACACCT TCTGCTGGCA TAGAAGGCAT GGAAGACAGG
  AGCTCCTTCT CTTTGTCTGG TTGCTCTCGC TGGCAAGTCC ATCCCTTCAC TGTCATTAGA
  ATCCACTTCT CAGGATTCCA GACTACACTG AAGACCAGCT GAGACATCCA GCCTAGTGGA
  CTGACCAACT ACTGAATTCT CCAATATTCT GTTGTTAGAG AGCCATTGTT GGACCAGCAT
  R
  TAAGCTGTTC TAATAAATCC CCACTTCTCT CCATGCTTTT CCTATAGAGA ACCTTGAGCA
  ATACAGCACC AAAGAAGGAG AAGGATATTG CATTAAATGA AAGAACAACC AGGACACCTT
  ATAAGGCTAA ACAATCACAG GGTATGTACA AATTATTGAT TAAACCTGGG TCAGTTCCTG
  TAAGTGTAAG GTAATGAAAA TGTACAGAAG ACAAACTCAC TGAACTTTCC TTAAGACAAT
  GCAGGGGAAA GCACTCTGTC AGTTTCTCCC TCCACTCCCA GGCTCTTCAT CGAATATAAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45266117	mCV23813360	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33890062					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113781664 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562807	regulatory region 562807	1324 bp distal
Rr562808	regulatory region 562808	1512 bp proximal