rs33890059 SNP Detail

Summary

• ID
  rs33890059
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113749642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGTTGCTGTA ATAAAAGATC ATGTCCAAAG CCAATTTAAG GAAGAAAGAA TTTATTTGGG
  ATTAAAGTTT CAGATAAAGA GTCTGTAAAT GTGGAGGGGG CATGGCAGCA GACAGAGAGC
  AGGAAACTGA GAAAGCGATC AGTTTTTCAA CTACAAACAT GAAACTCAGA AGAAACTGGA
  AGAGAGGTGC TGTGAATGCT TGAAACCTGC CTCCAGTGAC TTTCTCCAGC AAGGCCTCAC
  CATCTCCCCA TAGATAGCTG GGAGCCATAT GATCAAATAA GACTATGGGG GATGTTTATC
  W
  TTTAGATCAT TTTGCCTTGA TTGACTCACA ATACTACATC TAAAAGGCAC AACTGTGAGT
  CTGAAGAATC TTAGATTCAG AGGTTGGTGA CATTTCAGAG GTTGGTGACC TTGAAAGTAA
  CAACATTCTT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  ATCTAGGGTG GGTATTCGTT GTTCTCATAA TCTTGGTGTT GATTCATCAG TCCTAATACA
  GCTGTTTTTC AATGGTTATT GTACTCATCA TTATTAAGTC TCCATTTCTG TATCTATAAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45265163	mCV23812023	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33890059					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113749642 () rs orientation: forward

Symbol	Name	Function Class
Gm21596	predicted gene, 21596	1040 bp downstream
Gm75060	predicted gene, 75060	within coordinates
Rr562806	regulatory region 562806	306 bp proximal