rs33890007 SNP Detail

Summary

• ID
  rs33890007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119074759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGCCTCCCCA GCCAGCGCTG GGATTGTAAG TGCATGACAT TTCATCCGGA TTTTTTTTTT
  TTTTTTTTTT TTTTTGGTTT TTCGAGACAG GGTTTCTCTG CATAGCCCTG GCTGTCCTGG
  AACTCACTTT GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CCACCTGCCT CTGCCTCCCG
  AGTGCTGGAA TTAAAGGCGT GCGCCACCAC ACCCGGCTTG GATTTTTGAT ATGGGTTCTG
  GGAATTGAAC TCAAGTCCTT ATGCTTGCAA GGAAATGCTT TAGTGATATA GAGCGTTCTC
  Y
  CTGCTCTGCT CCACTCTCTG CTCTGCTCTC TACTCTGCTC TGCTGTATCC TAACCCTAAC
  CCTGGCGAGC GAGATCGAGG GCCTTGCTCA CGTGAGTCAA TAGCTCAACA CTTTGCCATT
  TCCATTTTTT ACAGCCTCAG CTATCCCAGG TAATGTCCTA GAAGTCCTTT ATGTCATCAT
  TTATGCAAAG ACTCTTTCCA AATAAAGTCG TATTCAAGGG TTCTAGAAGT TCTGTGGGTG
  TAAGGATGGG GGCCGTCCAG CCCATCTTTA GCAGGAATCC ATCTTTGTGC TTATCTCTCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45251236	mCV24414251	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33890007					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119074759 () rs orientation: forward

Symbol	Name	Function Class
Rr563452	regulatory region 563452	1362 bp distal
Rr563453	regulatory region 563453	654 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron