rs33889956 SNP Detail

Summary

• ID
  rs33889956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113781499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCTCACAAAG TTGGGGATTT CTCAATTCTA GGAATGCCTT CTGAGAAATC AGAAGAAATA
  TTAATTTGTC TAGGACACCA CCGTAATGGT TATTCTTACT TATATACCTG ATTACATCTA
  GAAGGAACTA AAATCCAAGT GGCTGAGTGT ATCTGTGAGC TATTTCTTCT TTATTAAATC
  ATTTGAAGTG GGAAGACCAC TTTCAATTCA GATCTTTTGA GGTGGGAAAA TTTCCCTATA
  ACCTGGACCA CACCTTCTGC TGGCATAGAA GGCATGGAAG ACAGGAGCTC CTTCTCTTTG
  Y
  CTGGTTGCTC TCGCTGGCAA GTCCATCCCT TCACTGTCAT TAGAATCCAC TTCTCAGGAT
  TCCAGACTAC ACTGAAGACC AGCTGAGACA TCCAGCCTAG TGGACTGACC AACTACTGAA
  TTCTCCAATA TTCTGTTGTT AGAGAGCCAT TGTTGGACCA GCATGTAAGC TGTTCTAATA
  AATCCCCACT TCTCTCCATG CTTTTCCTAT AGAGAACCTT GAGCAATACA GCACCAAAGA
  AGGAGAAGGA TATTGCATTA AATGAAAGAA CAACCAGGAC ACCTTATAAG GCTAAACAAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45240782	mCV23813359	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33889956					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113781499 () rs orientation: forward

Symbol	Name	Function Class
Gm39909	predicted gene, 39909	within coordinates
Rr562807	regulatory region 562807	1159 bp distal
Rr562808	regulatory region 562808	1677 bp proximal