rs33889845 SNP Detail

Summary

• ID
  rs33889845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113749704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAAGTTTCA GATAAAGAGT CTGTAAATGT GGAGGGGGCA TGGCAGCAGA CAGAGAGCAG
  GAAACTGAGA AAGCGATCAG TTTTTCAACT ACAAACATGA AACTCAGAAG AAACTGGAAG
  AGAGGTGCTG TGAATGCTTG AAACCTGCCT CCAGTGACTT TCTCCAGCAA GGCCTCACCA
  TCTCCCCATA GATAGCTGGG AGCCATATGA TCAAATAAGA CTATGGGGGA TGTTTATCAT
  TTAGATCATT TTGCCTTGAT TGACTCACAA TACTACATCT AAAAGGCACA ACTGTGAGTC
  Y
  GAAGAATCTT AGATTCAGAG GTTGGTGACA TTTCAGAGGT TGGTGACCTT GAAAGTAACA
  ACATTCTTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTAT
  CTAGGGTGGG TATTCGTTGT TCTCATAATC TTGGTGTTGA TTCATCAGTC CTAATACAGC
  TGTTTTTCAA TGGTTATTGT ACTCATCATT ATTAAGTCTC CATTTCTGTA TCTATAATGT
  CCTCTGTTTT AAGTATTAAA TAAAAAATTC CGGAGGCCAT CATTTTAGAC TAGACTCCTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45214439	mCV23812030	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33889845					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113749704 () rs orientation: forward

Symbol	Name	Function Class
Gm21596	predicted gene, 21596	978 bp downstream
Gm75060	predicted gene, 75060	within coordinates
Rr562806	regulatory region 562806	244 bp proximal