rs33862778 SNP Detail

Summary

• ID
  rs33862778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19682932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCG TTATGGAGCC CTTCCGTCAA
  Y
  CGGCTTGCCG CTCCCTTCGA TAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss45548861	mCV24689020	ABI	CRAMUS_MOUSE	f	SNP	C	T				C		C
ss60376868	NES15884521	PERLEGEN	MM_PANEL2	f	SNP		T	C	C	T		T		C	C	C	C	C
ss134669390	ENSMUSSNP6095005	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs33862778					SNP	C	T	C	C	T	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376868	NES15884521	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19682932 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	35 bp upstream
Cpgi13003	CpG island 13003	within coordinates
Cpgi13004	CpG island 13004	1082 bp proximal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	227 bp upstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	737 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	321 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	14 bp upstream
Rr574008	regulatory region 574008	102 bp distal
Rr574009	regulatory region 574009	within coordinates
Rr574010	regulatory region 574010	1456 bp proximal
Tssr32702	transcription start site region 32702	83 bp upstream