rs33862696 SNP Detail

Summary

• ID
  rs33862696
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127623788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGACCAT TAGACATCTC
  CCACGTTCAG AGCCGTCCAA GTTCTTGGAG GTATGACTTT TGGGCAAACA ACACGAGAAG
  ATGGCAACAG TAAGTAAGTG CCAGGAGGCA CGCAGGTCCC ACCCACAGCA AACTCAACAG
  AACAATGAAT TCTTACTCCT GACTGGACAC TGCTGCCCAC CCTGGGTAGT TGAACTAGGG
  M
  AAGAAAAAAG CAGGGAAGGG GCTGGAGGAG GGAGGAGTCT CCGAACTAGA CAAAAACCAG
  AAAATAACAA ATGCTTTCTC AATCCTTGTA ACTATTTCAG TGAAGCAGTG ACTCTTCCTA
  CGTGGTAGGA GGCAGTCACC TTGTTAATGA AGGCGACTGT GCTCTACCGA CTCCCGCAGT
  CTAGCGCTGG GCCAACACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45548797	mCV23993699	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss135872315	ENSMUSSNP2048115	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320957259	CHEV_3_127533057	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33862696					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127623788 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	80 bp proximal
Rr584872	regulatory region 584872	670 bp proximal