rs33862561 SNP Detail

Summary

• ID
  rs33862561
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135368558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAGCATT TTTGTGAGAC
  ACATTTCCAG AAAGCATACT GAAAGGGTGG TTTTAAAACA CGGATCACCA CTTCCTTCCT
  ATGAATATTG TTGAATTTTA AAAGAGACTG TTGTGGCTAA AGAGATGGTT CTGTGGTTAA
  AAGTGCTTGT GGCTCTTCCA GAGGGCCTGG GCTAGGTCCC AAGCACCCAC AAAGCAACAG
  R
  TTTCCTTATA GTAATTTCAT ATATACTTAG TTTGGTTGAT CCACATCTCC CTGACTCCTG
  ACCCCAAATA TTTTTAAGGG AAAGCAAAAC AACAGGAAAA GGGGGTGTTT TTCTTACCTG
  TTGACAGTGG TATTTCTGGT GAATATAATT CTGCATTAAA TATTGAGTGA GTCAAAGCAG
  TGTTCAAATG AAACATCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss45541492	mCV25340013	ABI	CRAMUS_MOUSE	f	SNP	G	G	A				A		A
ss51649262	NES14653839	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A		G	A	A	A	A
ss135928168	ENSMUSSNP4681348	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs33862561					SNP	?	G	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649262	NES14653839	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135368558 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	287 bp distal
Tssr35804	transcription start site region 35804	497 bp downstream