rs33862405 SNP Detail

Summary

• ID
  rs33862405
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121891972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTGCCTCTTC CCAAGGTGAC AAGGGGGAAA CCGGCTTGGA GGTTTTAAAA TAGATGTAAA
  CATTTGAGAA CCTGCTGAAT TCTGTGTTTC TCAGAGTATC AAGGTCCCCA TCTAGGGAAA
  CACATCAGGA AATATGACTA TGAATCAGCT GCCTGATTAA ACAGCCAGGA TGGAGCCCAC
  GTCATCGCAG GAGCCAACAA TATCACCGAA AACATCAGCT GTTTATTCCA GTATATTAAG
  ATATAAGGTT CAAAGAGAAT GAGCTGATGC CCCTGGAAGT CATGTTATTA ACACTGTATT
  K
  GTTTTTTTTT TTCCTATTTA ACACTGTATT TGTTTATATC AGCTCTATTT TCCCCAACAG
  TTAGACCCTA GTTGAATCAC AGCAAAAAGC CTTTTTTTTT CTTTTAATGA ATTGCTGCCA
  GTTTTTTTTT TTTTTTTCAT GAAAAAACAT AGAATTTTGT TCAAAGCACA GAGGGATAGC
  CACACTTACA GCATTGTGGC TCACAAATTC AAACCAATTC AGTTCAGAAA ATACTTGTTG
  ACACCCTAGC ATGAAAAAAA AAAACAAACA AACAAAAAAC CCCACTATTC CAGAGACCAT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45520906	mCV23984920	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33862405					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121891972 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584230	regulatory region 584230			856 bp distal
Rr584231	regulatory region 584231			1412 bp proximal