rs33862190 SNP Detail

Summary

• ID
  rs33862190
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30068034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGCCAGGG CAACTCTTAG
  GATAAAGAGA TACTGGCTCG CATTAAAAGT CTCAAGACAG CAGCTTCAAA AGTGAAAACT
  AACACACATT TCCAGTTTCC AGTTAAGCAT ATTTTAAAAT AAAATATAAT TTAAGTTTCT
  ACTTAAATTT ATTCCTTTCC TTTTTATAGT TAGGTCCCCA GAAATGTGTA CATTTTAAAA
  W
  TACCCCTACA CACACACACA CACACACACA CACACACACA CACACACAAG AACAAATCTT
  AAAATCTAAA GCATTATTTT CATATCTCTC TCACAAATAG ATTGTAGTAG ATTGAGAATA
  TTTTCTAAGT TATTCAAAAG GCCATGACTT CCCCAGAGTC AAGTTATGCA AGTGGTTGCT
  TTTAGTGATT CATATTTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45508802	mCV22689458	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss134728237	ENSMUSSNP3972740	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs33862190					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30068034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13032	CpG island 13032	1292 bp distal
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	281 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	160 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	410 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574701	regulatory region 574701	1496 bp distal
Rr574702	regulatory region 574702	740 bp distal
Rr574703	regulatory region 574703	144 bp distal
Rr574704	regulatory region 574704	1278 bp proximal
Rr574705	regulatory region 574705	1543 bp proximal
Tssr28678	transcription start site region 28678	1676 bp downstream
Tssr32873	transcription start site region 32873	974 bp upstream
Tssr32874	transcription start site region 32874	865 bp upstream
Tssr32875	transcription start site region 32875	849 bp upstream
Tssr32876	transcription start site region 32876	736 bp upstream
Tssr32877	transcription start site region 32877	711 bp upstream
Tssr32878	transcription start site region 32878	639 bp upstream
Tssr32879	transcription start site region 32879	625 bp upstream
Tssr32880	transcription start site region 32880	545 bp upstream
Tssr32881	transcription start site region 32881	516 bp upstream
Tssr32882	transcription start site region 32882	486 bp upstream
Tssr32883	transcription start site region 32883	502 bp downstream