rs33862040 SNP Detail

Summary

• ID
  rs33862040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110048507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC AAAACAGTCT TAGACAATTC
  Y
  TGAGCCGATT TCCCTCTGCC AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45481781	mCV22910348	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss135590367	ENSMUSSNP5043491	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320871734	CHEV_3_109944109	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33862040					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110048507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13719	CpG island 13719			1059 bp proximal
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583463	regulatory region 583463			161 bp proximal
Rr583464	regulatory region 583464			637 bp proximal
Rr583465	regulatory region 583465			832 bp proximal
Rr583466	regulatory region 583466			1742 bp proximal
Rr583467	regulatory region 583467			1803 bp proximal
Tssr35233	transcription start site region 35233			1553 bp downstream
Tssr35234	transcription start site region 35234			1805 bp downstream