rs33861586 SNP Detail

Summary

• ID
  rs33861586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65299505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTGGAGA CAGTTTTGGC CTTCAAGTGG GCAGTTTCTC
  ATTCAATCGA GAAGGCTCGA GCTGCTCTCT AGGAGTTATT GAAATCCTAA ACAAGGCTGA
  Y
  CGCGGACCTC GGGCAAGGCC TAACTTGGCA TTCTGCACGT CCAAAGGATG CTCGGGAGTA
  AGGGGAGGTT TGCCACGGGT CACGCTGCTA ATTCAGTGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss45473117	mCV24254333	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss135250846	ENSMUSSNP2593356	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs33861586					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65299505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13227	CpG island 13227	within coordinates
Cpgi13228	CpG island 13228	1216 bp proximal
Gm5540	predicted pseudogene 5540	1253 bp upstream
Rr397698	regulatory region 397698	434 bp upstream
Rr577676	regulatory region 577676	374 bp proximal
Rr577677	regulatory region 577677	459 bp proximal
Ssr3	signal sequence receptor, gamma	Intron
Tssr893	transcription start site region 893	1098 bp upstream
Tssr33464	transcription start site region 33464	462 bp downstream
Tssr33465	transcription start site region 33465	495 bp downstream