rs33861557 SNP Detail

Summary

• ID
  rs33861557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37709835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATT TGATTCCTTT TTTTTTTCTG
  R
  CCAAAAGGCT ATTCACTACA TTAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45479569	mCV25377547	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33861557					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37709835 () rs orientation: forward

Symbol	Name	Function Class
Gm46799	predicted gene, 46799	within coordinates
Gm65224	predicted gene, 65224	within coordinates
Rr575530	regulatory region 575530	1096 bp distal
Rr575531	regulatory region 575531	600 bp distal
Rr575532	regulatory region 575532	405 bp proximal
Rr575533	regulatory region 575533	1294 bp proximal
Tssr28918	transcription start site region 28918	1255 bp downstream
Tssr28919	transcription start site region 28919	1181 bp downstream
Tssr28920	transcription start site region 28920	908 bp downstream
Tssr28921	transcription start site region 28921	332 bp upstream