rs33861469 SNP Detail

Summary

• ID
  rs33861469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129485482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAATTAC CCGAGAAAAA CAAAACAGTT CACTATAAAA
  CCCAGAGAGC AGGCAAGTAT GAGCTTTTCT GTCTGCAGAA CTGAGAGGGC AAGCCCTGGC
  Y
  TGGCTGTCAG GGTCTTTTGT GGGGTGCTGC CTGGGCTGTG TGGGTGATGA AGTCAGTACT
  GGGGACTGTT TTAAGAGAAA CAAAAGCTGG CTGGGTTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45467880	mCV25348419	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135887971	ENSMUSSNP4766705	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33861469					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129485482 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585067	regulatory region 585067			1178 bp proximal
Rr585068	regulatory region 585068			1816 bp proximal