rs33860861 SNP Detail

Summary

• ID
  rs33860861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:154685848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATATACTTA ACACTTAGAA ATCAAGAGCC CAAATGAACA
  GTAAACCATA AACCAACCTT ACTTCCTTTA TGCTTGTATG TTAGTCTTGT TCTGTTTTTG
  Y
  TTTGTTTTGT TGGTTTTGAT TTTTTTGGTT TCTTTCTTGC TTGCGTGGGT ATTTTGTCAT
  AATGATACAA ATGTTCCTAC CACATATTAA TCTTCCCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45398183	mCV24827199	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136121297	ENSMUSSNP6215967	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33860861					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:154685848 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit219	DNA segment, Chr 3, Massachusetts Institute of Technology 219			644 bp distal
Rr587912	regulatory region 587912			834 bp distal
Tnni3k	TNNI3 interacting kinase			Intron
				Noncoding-Transcript-Variant