rs33860774 SNP Detail

Summary

• ID
  rs33860774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19217303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCAGCATC AGAGCCGCAC
  CCACCACGGC GGACAACGGG CGGCGAAGAC CCCGAGCCAC GGCCCGACTC AAAGAACCAC
  AGGGCTGAGT CGCTGGCGGC GGAGGAGCTG CAGGCTCCGC GGTGACCCTG TCACCTCTGC
  TGGCTTTATT ATCCCATTGG CTGAAAATGA AGCAACGTGA GGAAGGACAC CCAACCAGAG
  R
  CGGGATGTTC TCAAACCTAG TAGCTCATTG GTGAGCTAGA CCGGACCTAT GAGGACCCAG
  AACACTGAAT TGGAACCAAG GGCTCGCCGT CCACGGAGTG CTAAACAAAT TTACAGCCAT
  CGTGGCTCCG CGACTACAAT TCCCAGGGTT CCCGCGGCAG GAAGGGCTTC TGCTTCTGTG
  TGCAGACACG CGAACAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45398116	mCV22998923	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss134665475	ENSMUSSNP1215971	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33860774					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19217303 () rs orientation: forward

Symbol	Name	Function Class
Armc1	armadillo repeat containing 1	mRNA-UTR
Cpgi13000	CpG island 13000	within coordinates
Gm65410	predicted gene, 65410	67 bp upstream
Rr397613	regulatory region 397613	within coordinates
Rr573944	regulatory region 573944	85 bp distal
Rr573945	regulatory region 573945	287 bp distal
Rr573946	regulatory region 573946	within coordinates
Rr573947	regulatory region 573947	170 bp proximal
Tssr32687	transcription start site region 32687	54 bp upstream