rs33859376 SNP Detail

Summary

• ID
  rs33859376
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172343082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTCCTAGTG CTGGGAGGCT GGGTTCCTCC TAGTGCTGGG
  AGGCTGAGTT CCTCCTAGTG CTGGGAGGCT AGGTATCTCC AGGCATTTCA GAGGGGCAGG
  M
  GGAAGGGGAG GACAGGGAGT GGCAGAAAGC CAGTGTCCCC CCCTGGAGAT ATGCTTAACT
  GAGAAGCCAG ACTTTAATAG CTCTGCTGGA CTCTGTCTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45053489	mCV24953304	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss120011713	PARCsnp_1.19935	PARC_SEQ	INBRED	f	SNP			A	C
ss120014614	PARCsnp_1.09983	PARC_SEQ	INBRED	f	SNP			A	C
ss146194094	ENSMUSSNP5973196	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33859376					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172343082 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	668 bp downstream
Gm57108	predicted gene, 57108	1501 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396591	regulatory region 396591	1181 bp downstream
Rr423603	regulatory region 423603	1512 bp distal
Rr423604	regulatory region 423604	1377 bp distal
Rr423605	regulatory region 423605	841 bp distal
Rr423606	regulatory region 423606	within coordinates
Tssr302	transcription start site region 302	1503 bp upstream
Tssr10236	transcription start site region 10236	1368 bp downstream
Tssr15228	transcription start site region 15228	1535 bp upstream