rs33855562 SNP Detail

Summary

• ID
  rs33855562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37514765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGAGCT CCCAGGATGA
  CTCAGTGGGT AAAGGCACCC CAGCAAGGAA CAAAGTATTT GGCTGTGCTC TGACCTCTGT
  GTGACACAGA ACATACACAC ACACACATAC ACACACACAC ACACACACAC ACACACGCAC
  ACACACAGCT GCTGATACAT ACAACACGCT CACACACAAC ATAAACACTG CACTCAAACA
  Y
  TACATGCAAG CGGACACAAC TCATACACTC ACAAAAGAGG AGAGAGAGAG ACAGAGAGAG
  AGACAGAGAG AGAGAGAAAG AATATAACTT TTTAAAACCT TAATCTGTCA CTCCTGTAAC
  GGGAGATCCT CTGTTCCCTT CTGGCCTGAG TGTACCAGGT ATACACATGG TTCGAATATG
  TGCACACATA TATACATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47232630	NES11120895	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33855562					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47232630	NES11120895	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37514765 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	740 bp downstream
Rr409535	regulatory region 409535	1981 bp distal
Rr409536	regulatory region 409536	523 bp distal
Tssr11302	transcription start site region 11302	226 bp upstream