rs33854004 SNP Detail

Summary

• ID
  rs33854004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:10345458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAGCAGA AGGGAAGCAG
  AGAAAGGGTA ATAGAAGAGC TATGATAGGA AAGCAGAGGG AAAATGTCTG GGGGACTGAA
  GGGGACCCTG GGAGAAGCCA GTGAGAAAGA GGGAAGAAAT AAAAATAAAC TGTGATGAGT
  TTGTAGTGCG TGTGTGAGTG TGCAAGTGTG CAAGTGTATG TGAAAATACC ACAATGAAAC
  Y
  CATTACTTTG TATGTTAATC CAAAGCTTAA TAAGATGAAG TTATATAAAT AAAATAATAA
  CAAATAGTAG TGGTATTTAA TAATAATAAT AATAACAATA AATAATGGTT AAAACAAAAA
  CAGCAAGAAG CTGAGCATAA CGATAGATTC CTGCAATCCC AACACAGGAG CCTAAGGCAG
  TAAGAGTGTA TACTAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49558912	NES12892737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33854004					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49558912	NES12892737	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10345458 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fabp12	fatty acid binding protein 12			Intron
				Noncoding-Transcript-Variant
Rr573601	regulatory region 573601			963 bp proximal