rs33843072 SNP Detail

Summary

• ID
  rs33843072
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:65693086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGCCAG AAGCGCTGCT
  GGGTAGCGAG CTGCTCCAGT AAGGATCTTC CTACCCTGGG GTGGGTGGGT GGGGGGATAC
  CGCCTGCGCT CCTCGCTGCT GTGCCACTCA CTGCACGGCC CGCCCGACTG GTACCTAGGA
  GGTGCTGGCT TCTGAGCCTC TCAGAGACGC GGATGCTGCG GGAGCCTCCA GGGGAAGATC
  K
  AGGCGGAGCG CTCTCTCTGG GTAAGTTCGG AATACTCGGG AATGCCGTGG CAATGAGACC
  CACGAGCCGG GTTTCTTTGG CCTCAAAGTG GGTATGAGCA GGGAGAGGCT AGACTATACC
  CACCGTGATC AGTCAGCCCT TGTGAATCGC CCTCTCCCCT CGGTACCCTC GGGGCTCTCT
  CCTTTTTGCC CCTGACCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38376615	NES09706086	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33843072					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38376615	NES09706086	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65693086 () rs orientation: forward

Symbol	Name	Function Class
Gm61789	predicted gene, 61789	within coordinates
Rr691649	regulatory region 691649	152 bp distal
Rr691650	regulatory region 691650	11 bp distal
Rr691651	regulatory region 691651	within coordinates
Slitrk2	SLIT and NTRK-like family, member 2	mRNA-UTR
Tssr161127	transcription start site region 161127	86 bp downstream
Tssr161128	transcription start site region 161128	33 bp downstream