rs33843071 SNP Detail

Summary

• ID
  rs33843071
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:65693199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGCCCGC CCGACTGGTA
  CCTAGGAGGT GCTGGCTTCT GAGCCTCTCA GAGACGCGGA TGCTGCGGGA GCCTCCAGGG
  GAAGATCGAG GCGGAGCGCT CTCTCTGGGT AAGTTCGGAA TACTCGGGAA TGCCGTGGCA
  ATGAGACCCA CGAGCCGGGT TTCTTTGGCC TCAAAGTGGG TATGAGCAGG GAGAGGCTAG
  R
  CTATACCCAC CGTGATCAGT CAGCCCTTGT GAATCGCCCT CTCCCCTCGG TACCCTCGGG
  GCTCTCTCCT TTTTGCCCCT GACCTTCCAA GGCTGTGATA GGGATCCAGG AATCCCAAAG
  CTAGGAGACC ACTGCTACTG CCAGGAATGA CCCATGCAAG ATCTTCTGCT AGTGAAATGA
  ACCATTCACT GGCAGTGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38376614	NES09706088	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33843071					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38376614	NES09706088	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65693199 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm61789	predicted gene, 61789			113 bp upstream
Rr691649	regulatory region 691649			265 bp distal
Rr691650	regulatory region 691650			124 bp distal
Rr691651	regulatory region 691651			within coordinates
Slitrk2	SLIT and NTRK-like family, member 2			Intron
				mRNA-UTR
Tssr161127	transcription start site region 161127			199 bp downstream
Tssr161128	transcription start site region 161128			146 bp downstream