rs33843068 SNP Detail

Summary

• ID
  rs33843068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:65694554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTGAG AACTAATAGT
  AATTATATTT ATTTTAGCAG TAAAAACTTT ACAATTGTGT GAAATGCCCC ACTGAGTTTA
  GGTATACAAT CCTCTAATTC ATATTAAGCA GTACTGTGTT GTTTCTAATT TTAGCTTCTT
  GAAGTTAACC AAGTCAGCAA GTCACCTGGC TGAGGAATGT CCTGATCTGT AAAATAATTC
  Y
  GGTCTGTTGG GTTTTGTACA GCTGTCACAG TGGATTTTAC TTCAGTAAGA TAACCTAATT
  AGCAAGTGTT TGTTAAACTA AAGCCCGAGT GAATAAATCA TATCTCCCTA GGAACAATGT
  ACTTTTAATA TTTAGAAATA CATAGAAAGT GCCCTTTCCT TATGAAAGAA GTGAACTTTT
  GCTCAGGACA TATTACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38376610	NES09706030	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33843068					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38376610	NES09706030	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65694554 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm61789	predicted gene, 61789			1468 bp upstream
Rr691649	regulatory region 691649			1620 bp distal
Rr691650	regulatory region 691650			1479 bp distal
Rr691651	regulatory region 691651			1233 bp distal
Rr691652	regulatory region 691652			1569 bp proximal
Slitrk2	SLIT and NTRK-like family, member 2			Intron
				mRNA-UTR
Tssr161127	transcription start site region 161127			1554 bp downstream
Tssr161128	transcription start site region 161128			1501 bp downstream