rs33843065 SNP Detail

Summary

• ID
  rs33843065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:65694967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCACGTG CAGTCGAATG
  GGAGGCTATC CACCACTGCC CTCCCAACTC CCAGGGCTTC TGTGCTTGTC TCATGGTCGG
  TCACTCTATG GCCCAGAGAA GGACAATTAA GGCTCCAGTC TGAAATGGCA GCATGAGAGG
  GAATCCAGAA GTATGGTCAA AGGCTTTTCT TGAAAGGAGC AGGAAGGAAG ATCACAATGC
  Y
  ACAGGTGGCC TTAGTGCCAA ACTTTATAGA CTGCCCCAAT CTTTATTAGA GAGGAAGGAA
  TTTGTATAAG CTACACAGGT CAAAGATTTC TGCTTTAACA GGGAGAGAAA CAGGATAAAA
  CGGGTGGTTT CCCATTCATG AATGGCTTAT TTTGCCTGGG GCATTGCCTA CCTTCCATTT
  TGGCTAGGCA ATGAAATCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38376607	NES09706041	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33843065					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38376607	NES09706041	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:65694967 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm61789	predicted gene, 61789			1881 bp upstream
Rr691650	regulatory region 691650			1892 bp distal
Rr691651	regulatory region 691651			1646 bp distal
Rr691652	regulatory region 691652			1156 bp proximal
Rr691653	regulatory region 691653			1657 bp proximal
Slitrk2	SLIT and NTRK-like family, member 2			Intron
				mRNA-UTR
Tssr161127	transcription start site region 161127			1967 bp downstream
Tssr161128	transcription start site region 161128			1914 bp downstream
Tssr161129	transcription start site region 161129			1642 bp upstream
Tssr161130	transcription start site region 161130			1676 bp upstream