rs33842559 SNP Detail

Summary

• ID
  rs33842559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:28892556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTTTTAT GTAGAGGACT
  CCCGCTGAAC AGACCCCTCC CTGTGTGCTC ACTTCTTCAA CAAGGTGGCA TAAGCATCCT
  CGGTTGCATT CTCCTCTGCG TTCTCTGAAC ACACTACTAC GAATGGTTGC TACAAAGAGG
  GCAGAGCGCA GCAGTCTGCT GGGGCCATAG CCACACCAGT CCCTGAAGGA GAAAGCTCCA
  Y
  GTTAGCACCT GAAGGACTGG AGGCACTTCA TAAAGGGGGG TGGGGGAGCA GAATGATAAG
  CAGAACAGTT TGACAGCCCA CCCAACCCCA GAGCAATGTG TGTAACCAGA ACATGCAGGG
  GTGGCAAATA TCAGCACATC TAGAAGCCAA GCAGAATCAG GGGTCAGCCC TGGGTGCAGA
  GCTCAGCTGT GCAAGGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47859100	NES11696906	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33842559					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859100	NES11696906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28892556 () rs orientation: forward

Symbol	Name	Function Class
Rr627453	regulatory region 627453	1513 bp distal
Rr627454	regulatory region 627454	485 bp distal
Snd1	staphylococcal nuclease and tudor domain containing 1	Intron