rs33842271 SNP Detail

Summary

• ID
  rs33842271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:28892320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGCTA CTTGGTATTG
  CTCCTTCCCT GGTTTGCAGG TGTGTAAGGA ACACATTCAG GAAAGTGCAC CAGGGGTGTA
  GCTCACACAT AAACAAAACT CCACAAGCTG CACCACACTC AATAGAGGCC AGCAGCAGCT
  CCCTCCCAGT CAGCCACAGG CAGCCCCTCT CTGACCTCTG TCCGATGGAT GACTTTGCCC
  R
  TCTTGTGCTT CCACCTCTCG GCTCCCCCTG GCTGTGGTGT TTTATGTAGA GGACTCCCGC
  TGAACAGACC CCTCCCTGTG TGCTCACTTC TTCAACAAGG TGGCATAAGC ATCCTCGGTT
  GCATTCTCCT CTGCGTTCTC TGAACACACT ACTACGAATG GTTGCTACAA AGAGGGCAGA
  GCGCAGCAGT CTGCTGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47859092	NES11696898	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33842271					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859092	NES11696898	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28892320 () rs orientation: forward

Symbol	Name	Function Class
Rr627453	regulatory region 627453	1277 bp distal
Rr627454	regulatory region 627454	249 bp distal
Snd1	staphylococcal nuclease and tudor domain containing 1	Intron