rs33841855 SNP Detail

Summary

• ID
  rs33841855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:28891175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTCCTGC ATCAGTACTT
  GCAGGCAAGC CCCAGAACGC CCAGACTTCT GGACTTGCTC TATGGGTTTG GAACCATGGA
  TTATATACCT TCCCTGTGCT TTTCCAGTTT TGCCCCCAGT TGTTCATTCC CTTCTTGCCT
  CCCTGCTAAA CAGATTAATA CGCAGACAGC ATTTAGCATG GCATTGGGTC CAGCAAAGTG
  Y
  CAGGGCTGTT TTGAGGTCCT CGGAGCCTTA CAACAGCCCA GGAGGCAGCC AGTGCTGTAC
  ACGAAAACCC AGTCATGTCC TGGAGTTTCA AGGGTCTTAA GCCCCTGGCT TGAGTGGCTT
  GAGAAACTTC CCAGGGGGAG AAGAGAAAGT TGGTCTGACA GATGAGGAAG GGTTTGCTCA
  TCTCTGACTT TGTCCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47859076	NES11696889	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33841855					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859076	NES11696889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28891175 () rs orientation: forward

Symbol	Name	Function Class
Rr627453	regulatory region 627453	132 bp distal
Rr627454	regulatory region 627454	267 bp proximal
Snd1	staphylococcal nuclease and tudor domain containing 1	Intron