rs33841183 SNP Detail

Summary

• ID
  rs33841183
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:28891136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGCGAA TGCACTGGCG
  TGTTCTGTCT CCGTCCATGC TGGTCCTGCA TCAGTACTTG CAGGCAAGCC CCAGAACGCC
  CAGACTTCTG GACTTGCTCT ATGGGTTTGG AACCATGGAT TATATACCTT CCCTGTGCTT
  TTCCAGTTTT GCCCCCAGTT GTTCATTCCC TTCTTGCCTC CCTGCTAAAC AGATTAATAC
  R
  CAGACAGCAT TTAGCATGGC ATTGGGTCCA GCAAAGTGTC AGGGCTGTTT TGAGGTCCTC
  GGAGCCTTAC AACAGCCCAG GAGGCAGCCA GTGCTGTACA CGAAAACCCA GTCATGTCCT
  GGAGTTTCAA GGGTCTTAAG CCCCTGGCTT GAGTGGCTTG AGAAACTTCC CAGGGGGAGA
  AGAGAAAGTT GGTCTGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47859074	NES11696888	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33841183					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859074	NES11696888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28891136 () rs orientation: forward

Symbol	Name	Function Class
Rr627453	regulatory region 627453	93 bp distal
Rr627454	regulatory region 627454	306 bp proximal
Snd1	staphylococcal nuclease and tudor domain containing 1	Intron