rs33840499 SNP Detail

Summary

• ID
  rs33840499
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:28889698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGCCATGT GATGGCAGAG AAAAGCCCAC CTCATGCATG
  TGGCCCTACC CTAACTGCAC ACATACTTTG AGAAAATCCG ATGGCTTGAC CTTCCTGACC
  M
  TGATGATACT CCAAAGCTGC CTTGGCCTTC GTTTGAGGCA CCAGTGAAAG TAGGCTGGCT
  ATCCCTCACA AGCCAGACAT CCCACCCAAA CACTGGGCAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47859060	NES11696958	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33840499					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47859060	NES11696958	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28889698 () rs orientation: forward

Symbol	Name	Function Class
Rr627453	regulatory region 627453	623 bp proximal
Rr627454	regulatory region 627454	1744 bp proximal
Snd1	staphylococcal nuclease and tudor domain containing 1	Intron
Tssr55210	transcription start site region 55210	1194 bp downstream
Tssr55211	transcription start site region 55211	1122 bp downstream