rs33840197 SNP Detail

Summary

• ID
  rs33840197
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191310067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGAAAA CAGGCAAGAT
  CCCCTTCCTG CAGAGAGAAA GGTTTAGTGA CATCACTCAA CCTGATGGCT CTGTGCACAC
  CTGGCTTTGA GAGGATGGGT GGGAGTGGGG AAGGTGACTC ATTCCCTTTC TTGCTGCACA
  TGAGTGGAAG CTGGTGAACC TAATGCTGTA GGAAAAGCCT GATCGTGGAG TGCTGATTCA
  R
  CTCTTGAGAA CTGGGTGAGA GTCAGGACAG AATCCACACA CTAGGATTTC CTAGCGTTGT
  TACCATCCAC CCAGTTCCAC CATCTTAATT CTCCCTGTGA AGACCACTGT TGTACTGCCC
  ATGTGTGCAG GAATGTAACT GGTGTTAGGG AGTGAGGACT CAGCACAGCC CCTCTGAGAG
  AATGAATGGC CTTAGCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49545679	NES12900992	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33840197					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49545679	NES12900992	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191310067 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1224	CpG island 1224			1650 bp distal
Ints7	integrator complex subunit 7			Intron
				Noncoding-Transcript-Variant
Rr396728	regulatory region 396728			1776 bp downstream
Rr426187	regulatory region 426187			731 bp distal
Rr426188	regulatory region 426188			1945 bp distal
Rr426189	regulatory region 426189			1778 bp distal
Rr426190	regulatory region 426190			1629 bp proximal