rs33829541 SNP Detail

Summary

• ID
  rs33829541
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184824004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGCCGT AAATCAAATA
  ATATCTTATG TGTCCTCGGG GGGCTTGCTA CTTAGAGAAC TTCTCCTTAA ACACTTTATC
  TGTCAAACAC ACATAAGTAT GCAAACATCG TGTGTGTACA ATGCATTTAT CTTGACTTAA
  AACTGGATGC AACTGTGGCT TCTTGCTTGC TACTAAAATT CCTCTTTTCT CCCCAAAGAC
  W
  TAATGGCTAA AAGCCACTGT CCTAAATATC TGCTTGATTC TCAGACAAGA AGACACCAGT
  TCCTTGTCAG CCACCCCACA TATACAATGA GCTACTGTCA GTAAGCTCTC TGACGCGTAC
  GACGACGTCT GGCAAACGTG GTTTATTTTT AACAGTGTGA GGGAGGAGGG GAGGGACCCC
  TCTGGCCTCT CCCCGGATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49541877	NES12925230	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	T	A	A	T		T	A	A		A
ss320172329	CHEV_1_186915686	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33829541					SNP	A	A	T	A	A	T	A	A	T	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49541877	NES12925230	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184824004 () rs orientation: forward

Symbol	Name	Function Class
4930433J02Rik	RIKEN cDNA 4930433J02 gene	within coordinates
Gm37662	predicted gene, 37662	within coordinates
Rr372582	regulatory region 372582	within coordinates
Rr425334	regulatory region 425334	29 bp proximal