rs33805844 SNP Detail

Summary

• ID
  rs33805844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:27889583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTTGGA ATGAGAGCAG
  AGCAAGGGAG AGAAGGAGGG AAGGAGGGAG GAAGGGAGAG AGGAAGGGAT GGCGGAAGGG
  GGAGTGAGGG TTAAACAAAG TAAAGGATCA TGCCTGACTG TTTATGGGGA AGATAGGATC
  TGAACAAAGA TCCTTAGGCT TGCATTGCAA ACTTTTTTTC AATTGACACA CTTCCGCAAC
  Y
  TCATACTATC ACATTAATTA TATATTTTTA CTTATTAAAG CAGATCCATT AAATTGTCAG
  CTCAACAACA CTTGGATAGT TTCTTGTTCG GGACAATTAA AGCTATAAAA AGTTATATAC
  TTCAACTCCC TAGAAGAAAA GTCCATAGTT CTGAGAACTT TTTTAATGGT TACTTATTGA
  TCAATCATTT GGTTCAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47848064	NES11645534	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33805844					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47848064	NES11645534	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:27889583 () rs orientation: forward

Symbol	Name	Function Class
Grm8	glutamate receptor, metabotropic 8	Intron
Rr627333	regulatory region 627333	874 bp distal