rs33800559 SNP Detail

Summary

• ID
  rs33800559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174418464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTCTTAC TGTACTATTT
  AAATAGAAAG ACAAGAAGAT CCGTTCTTCC GTGTCTTCTA AGTCAGGCCT TGTTTGTGGG
  TCTTGGAGAG GAGGTGCAGA AGATGGAAGC ATATTTTGGG TTTGCTTTAT TAACTCTTGA
  TTAGCTTTCA AGCAAAAGAT CTCTGTGCAA ATGGAGAAGA CTCTGGTGTC AAGTTCAACA
  Y
  GAGGAGAATA CTCACTTTTG ATTAGCCTGC TGAAATAATT TTCTCTGGGA CGATGGTTCC
  ATTTTAAAGG CACCTGCTTA TATTCTAACC CCTGCCCCAC TCATGTGTTG GATGTGCTAT
  TTCGTGCTAT TTTCTGGTTT TTGTTTTTAA AGATACAATT TTAAATGAGG TACTGGACAT
  AACTAGATAG AAGGCTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49534544	NES12820120	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33800559					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49534544	NES12820120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174418464 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423776	regulatory region 423776	1702 bp proximal
Rr423777	regulatory region 423777	1963 bp proximal