rs33799652 SNP Detail

Summary

• ID
  rs33799652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:174419250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAACTTGG TTCCACGATT
  TTGGATCTGT GGTGAGGCAG CGCATTGTGG GTAGGTGGGT GGCGGTGCAT GGTGAATCAG
  AGCACTTTTA ACAACTGGGA AGCAGAGAAA GGTGAGATAT AGAATCCCAT TACTTCCTTT
  AAGGAATGCT CAAAGTTGCC TGTCCTGCCT CATCTTCTAA AGTTCTCCCA TCCTCTCAAC
  R
  TCACCAACTT GAAATCAAAG CCTTGGAAAC ATAAGTCTTT GGGGAATCTT CTTGTTTCCA
  AAAGATAAGA TGCAGTTATA GATAGGTAGC AAAAAGGTGA ATTGTGGAGT ATAGGGTGTG
  AGGACCTAGC CTATGGAACA TGAAAGGGCT GGGGATCAGG AGTCCTGGGG CGGTAGGAGG
  ACATAATTAT AACAGAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49534537	NES12820160	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33799652					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49534537	NES12820160	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:174419250 () rs orientation: forward

Symbol	Name	Function Class
Fmn2	formin 2	Intron
Rr423776	regulatory region 423776	916 bp proximal
Rr423777	regulatory region 423777	1177 bp proximal